PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010906741.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 1056aa    MW: 117963 Da    PI: 7.8936
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010906741.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.7e-09215235425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     ++Cr+fa+ G C++G++CkF H
  XP_010906741.1 215 PPCRDFAA-GRCRRGSQCKFLH 235
                     79******.************* PP

2zf-CCCH17.67.1e-06307330226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      te+C +f + G C++G++C++ H 
  XP_010906741.1 307 STERCYDFTK-GRCHRGSSCRYVHH 330
                     59********.*************7 PP

3zf-CCCH25.42.5e-08371390525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C++fa+ G C++G+ CkF+H
  XP_010906741.1 371 PCKYFAE-GRCRRGEDCKFSH 390
                     8******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.403211238IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-6211237IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-6215235IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-5216237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4304331IPR000571Zinc finger, CCCH-type
SMARTSM003560.027305331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.934305332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591366393IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5366392IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6369391IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5371391IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-6371390IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1056 aa     Download sequence    Send to blast
MAENVRKRIS KWDVVPEPHA PFISRQDSSL PLIADDPRKE KARSDWNSSN VDGEQFSRLA  60
ETKAEDFVHK DNSEAEKKFT RWSEQANDKT KLSEDFSERP PFPKQYDLEL HHKDGSSKSH  120
WEPQHENQTT VKVANMNKET DGWDLTQDHG YSSSMSPGLD SWRQRSCSGS PRAGWWRSRR  180
SRSRSRSRSR SPYGLNRGPE RWADRGRIGA GKLAPPCRDF AAGRCRRGSQ CKFLHEDGGR  240
RHSGRNYETD LRENRYEKQR YSGQDKENYA DSWEQSDYAR NKLSPRHGSQ YDEGDCVKLE  300
LHKSNKSTER CYDFTKGRCH RGSSCRYVHH EVSSHGGWST RDEAREKTYD RRDLNASLGG  360
RIESRRVSDT PCKYFAEGRC RRGEDCKFSH QDVPHEHLEG RPGDNSMIYN LGIGDGSSRI  420
SSNWSDQTTA INVTNSSQWI SNDGAGIAVP QSVDRVDSGQ KPQYSQSQNP EGGNCQIVAQ  480
EASQKASTSQ EEKITEENSG QHQIPTVSAQ QTADRAYSIK DEMFSCEKNG TTVASNARPQ  540
AEMNSASNLS TVVSIAGQSF SQDGQSQYMG PQPFHAQSFT PNAQFQQIVP PLPFSGQLQQ  600
LYPMTSNGQS QFRVHSALLN TQNFNLSMHN QPVHLGQNKQ NYNPGGQTQQ NLNLPPPQTG  660
QSQQNFQVLQ SLPPPQSGPS QQNFNLSGQI QYTVPPFSGQ NQQNNSLNGQ NHQSLPPPQN  720
GPSNQNVHLL APDGQSQYAT PQPANALSFN SEEKSLQTSS ENTGREGINQ NTDESEKKSL  780
PLCSDTPVAH KVVTSEQAAR ITDLSASLAQ FFHNSGLPPS QLFPPSSVRP PANPAAPFLQ  840
PSEGSWTQSH VPTSDIMQPI KSETGNLPSG FSSNSTEQKD PKMVETQTHL ESMIPVSVTD  900
GTDGNPSKGV NLKEKQQHGN HNPMQVELSV DTASKKVNEI ETGQIKKEQA AHLEDLDADM  960
RTDGESKRSK EIKGIRLFKC SLVEYVKDIL KPTWKEGHLS KEAHKTIVKK VVDKVTGAMQ  1020
GPNIPQTQEK IDLYLLHSKT KLNRLVQAYV EKYVKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179189RSRSRSRSRSR
2181189RSRSRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010906741.10.0PREDICTED: zinc finger CCCH domain-containing protein 55-like isoform X2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-15C3H family protein